IL_6SGC_007
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_007 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1488
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|54|C|30
6SGC|1|54|U|31
6SGC|1|54|G|32
6SGC|1|54|A|33
6SGC|1|54|A|34
6SGC|1|54|U|35
6SGC|1|54|U|36
6SGC|1|54|U|37
*
6SGC|1|54|A|44
6SGC|1|54|U|45
6SGC|1|54|U|46
6SGC|1|54|A|47
6SGC|1|54|G|48
6SGC|1|54|U|49
6SGC|1|54|C|50
6SGC|1|54|A|51
6SGC|1|54|G|52
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain j2
- Ribosomal protein L37
- Chain o2
- eL42
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