IL_6SGC_008
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_008 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.0849
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|C|81
6SGC|1|54|U|82
6SGC|1|54|C|83
6SGC|1|54|A|84
6SGC|1|54|G|85
6SGC|1|54|U|86
6SGC|1|54|A|87
6SGC|1|54|A|88
*
6SGC|1|54|U|96
6SGC|1|54|G|97
6SGC|1|54|A|98
6SGC|1|54|A|99
6SGC|1|54|C|100
6SGC|1|54|A|101
6SGC|1|54|G|102
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain Q2
- eL18
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
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