IL_6SGC_022

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6SGC|1|54|C|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_022 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3385

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6SGC|1|54|C|459
6SGC|1|54|C|460
*
6SGC|1|54|G|695
6SGC|1|54|C|696
6SGC|1|54|G|697

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain r2

Ribosomal_L28e domain-containing protein