IL_6SGC_030

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

6SGC|1|54|A|509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_030 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2585

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6SGC|1|54|G|508
6SGC|1|54|A|509
6SGC|1|54|U|510
*
6SGC|1|54|A|649
6SGC|1|54|C|650

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L2

eL13

Chain a2

Ribosomal_L18e/L15P domain-containing protein