IL_6SGC_038

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCU*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_038 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.1456

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6SGC|1|54|U|980
6SGC|1|54|C|981
6SGC|1|54|U|982
*
6SGC|1|54|G|1273
6SGC|1|54|A|1274
6SGC|1|54|G|1275

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain E2

60S ribosomal protein L6

Chain F2

uL30

Chain b2

eL29