IL_6SGC_041

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6SGC|1|54|C|1214, 6SGC|1|54|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_041 not in the Motif Atlas

Geometric match to IL_7A0S_030

Geometric discrepancy: 0.2777

The information below is about IL_7A0S_030

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6SGC|1|54|C|1082
6SGC|1|54|U|1083
6SGC|1|54|C|1084
*
6SGC|1|54|G|1213
6SGC|1|54|C|1214
6SGC|1|54|C|1215
6SGC|1|54|C|1216
6SGC|1|54|G|1217

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain F2

uL30

Chain b2

eL29