IL_6SGC_048

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_048 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2933

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6SGC|1|54|G|1425
6SGC|1|54|G|1426
6SGC|1|54|A|1427
6SGC|1|54|U|1428
6SGC|1|54|C|1429
*
6SGC|1|54|G|1455
6SGC|1|54|C|1456
6SGC|1|54|G|1457
6SGC|1|54|C|1458
6SGC|1|54|A|1459
6SGC|1|54|C|1460

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Q2

eL18

Chain b2

eL29