IL_6SGC_055

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_055 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1264

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6SGC|1|54|C|1551
6SGC|1|54|G|1552
6SGC|1|54|A|1553
6SGC|1|54|A|1554
6SGC|1|54|G|1555
*
6SGC|1|54|U|1572
6SGC|1|54|G|1573
6SGC|1|54|G|1574
6SGC|1|54|A|1575
6SGC|1|54|G|1576

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain R2

eL19

Chain p2

eL43