IL_6SGC_077
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6SGC|1|54|C|1935, 6SGC|1|54|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_077 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1669
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|G|1933
6SGC|1|54|A|1934
6SGC|1|54|C|1935
6SGC|1|54|C|1936
6SGC|1|54|C|1937
6SGC|1|54|C|1938
6SGC|1|54|A|1939
6SGC|1|54|G|1940
6SGC|1|54|A|1941
6SGC|1|54|A|1942
6SGC|1|54|A|1943
6SGC|1|54|A|1944
*
6SGC|1|54|U|2038
6SGC|1|54|G|2039
6SGC|1|54|A|2040
6SGC|1|54|A|2041
6SGC|1|54|A|2042
6SGC|1|54|A|2043
6SGC|1|54|U|2044
6SGC|1|54|G|2045
6SGC|1|54|G|2046
6SGC|1|54|A|2047
6SGC|1|54|U|2048
6SGC|1|54|G|2049
6SGC|1|54|G|2050
6SGC|1|54|C|2051
6SGC|1|54|G|2052
6SGC|1|54|C|2053
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 74
- 5S ribosomal RNA; 5S rRNA
- Chain B2
- uL3
- Chain I2
- 60S ribosomal protein L10
- Chain O2
- uL13
- Chain f2
- eL33
- Chain m2
- eL40
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