IL_6SGC_102

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6SGC|1|54|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_102 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.0914

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|A|2850
6SGC|1|54|G|2851
6SGC|1|54|U|2852
6SGC|1|54|C|2853
6SGC|1|54|G|2854
6SGC|1|54|G|2855
*
6SGC|1|54|C|3837
6SGC|1|54|U|3838
6SGC|1|54|G|3839
6SGC|1|54|U|3840

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain V2

Ribosomal protein L23