IL_6SGC_107

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6SGC|1|54|A|3663, 6SGC|1|54|U|3679, 6SGC|1|54|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_107 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0739

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6SGC|1|54|C|3660
6SGC|1|54|G|3661
6SGC|1|54|A|3662
6SGC|1|54|A|3663
6SGC|1|54|G|3664
6SGC|1|54|G|3665
*
6SGC|1|54|U|3677
6SGC|1|54|G|3678
6SGC|1|54|U|3679
6SGC|1|54|U|3680
6SGC|1|54|G|3681
6SGC|1|54|A|3682
6SGC|1|54|C|3683
6SGC|1|54|G|3684

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain A2

Ribosomal protein L8

Chain p2

eL43