IL_6SGC_114

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6SGC|1|54|A|3785, 6SGC|1|54|C|3791, 6SGC|1|54|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_114 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0784

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6SGC|1|54|C|3781
6SGC|1|54|C|3782
6SGC|1|54|A|3783
6SGC|1|54|A|3784
6SGC|1|54|A|3785
6SGC|1|54|U|3786
6SGC|1|54|G|3787
6SGC|1|54|C|3788
6SGC|1|54|C|3789
6SGC|1|54|U|3790
6SGC|1|54|C|3791
6SGC|1|54|G|3792
*
6SGC|1|54|C|3808
6SGC|1|54|G|3809
6SGC|1|54|C|3810
6SGC|1|54|G|3811

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain n2

60s ribosomal protein l41