IL_6SGC_115

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_115 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0806

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|G|3895
6SGC|1|54|C|3896
6SGC|1|54|G|3897
6SGC|1|54|G|3898
*
6SGC|1|54|U|4563
6SGC|1|54|A|4564
6SGC|1|54|C|4565

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain O2

uL13