IL_6SGC_123
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 6SGC|1|54|G|4084, 6SGC|1|54|C|4162, 6SGC|1|54|U|4163
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_123 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.1986
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|G|4082
6SGC|1|54|U|4083
6SGC|1|54|G|4084
6SGC|1|54|A|4085
6SGC|1|54|G|4086
6SGC|1|54|G|4087
6SGC|1|54|C|4088
*
6SGC|1|54|G|4161
6SGC|1|54|C|4162
6SGC|1|54|U|4163
6SGC|1|54|C|4164
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A2
- Ribosomal protein L8
- Chain G2
- eL8
- Chain X2
- Ribosomal_L23eN domain-containing protein
Coloring options: