IL_6SGC_132

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

6SGC|1|54|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_132 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0771

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6SGC|1|54|G|4405
6SGC|1|54|U|4406
6SGC|1|54|G|4407
*
6SGC|1|54|U|4435
6SGC|1|54|U|4436
6SGC|1|54|U|4437
6SGC|1|54|U|4438
6SGC|1|54|U|4439

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain I2

60S ribosomal protein L10