IL_6SGC_135

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6SGC|1|54|G|4522, 6SGC|1|54|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_135 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0941

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SGC|1|54|C|4456
6SGC|1|54|U|4457
6SGC|1|54|C|4458
*
6SGC|1|54|G|4520
6SGC|1|54|U|4521
6SGC|1|54|G|4522
6SGC|1|54|A|4523
6SGC|1|54|G|4524

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain V2

Ribosomal protein L23