IL_6SGC_146

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6SGC|1|54|U|4634, 6SGC|1|54|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_146 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2589

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6SGC|1|54|U|4632
6SGC|1|54|G|4633
6SGC|1|54|U|4634
6SGC|1|54|A|4635
6SGC|1|54|U|4636
6SGC|1|54|G|4637
*
6SGC|1|54|C|4662
6SGC|1|54|G|4663
6SGC|1|54|A|4664
6SGC|1|54|A|4665
6SGC|1|54|G|4666

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain W2

TRASH domain-containing protein

Chain d2

eL31