IL_6SGC_149

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6SGC|1|54|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_149 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.231

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6SGC|1|54|G|4680
6SGC|1|54|A|4681
6SGC|1|54|U|4682
6SGC|1|54|U|4683
6SGC|1|54|A|4684
6SGC|1|54|U|4685
*
6SGC|1|54|A|4705
6SGC|1|54|G|4706
6SGC|1|54|A|4707
6SGC|1|54|A|4708
6SGC|1|54|U|4709
6SGC|1|54|C|4710

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H2

uL6

Chain O2

uL13

Chain m2

eL40