IL_6SGC_152
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 6SGC|1|54|C|4757, 6SGC|1|54|U|4758, 6SGC|1|54|A|4764, 6SGC|1|54|G|4870, 6SGC|1|54|C|4871, 6SGC|1|54|G|4873, 6SGC|1|54|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_152 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5738
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|54|C|4756
6SGC|1|54|C|4757
6SGC|1|54|U|4758
6SGC|1|54|C|4759
6SGC|1|54|G|4760
6SGC|1|54|G|4761
6SGC|1|54|A|4762
6SGC|1|54|U|4763
6SGC|1|54|A|4764
6SGC|1|54|G|4765
6SGC|1|54|C|4766
*
6SGC|1|54|G|4868
6SGC|1|54|U|4869
6SGC|1|54|G|4870
6SGC|1|54|C|4871
6SGC|1|54|G|4872
6SGC|1|54|G|4873
6SGC|1|54|A|4874
6SGC|1|54|G|4875
6SGC|1|54|A|4876
6SGC|1|54|G|4877
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain E2
- 60S ribosomal protein L6
- Chain H2
- uL6
- Chain M2
- Ribosomal protein L14
- Chain O2
- uL13
- Chain S2
- eL20
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