IL_6SGC_157

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUCG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_157 not in the Motif Atlas

Homologous match to IL_8C3A_135

Geometric discrepancy: 0.1557

The information below is about IL_8C3A_135

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6SGC|1|54|U|4972
6SGC|1|54|U|4973
6SGC|1|54|C|4974
6SGC|1|54|G|4975
*
6SGC|1|54|C|4983
6SGC|1|54|C|4984
6SGC|1|54|U|4985
6SGC|1|54|G|4986

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain P2

uL22

Chain d2

eL31