IL_6SGC_158

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_158 not in the Motif Atlas

Geometric match to IL_3D0U_006

Geometric discrepancy: 0.1234

The information below is about IL_3D0U_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6SGC|1|54|G|4992
6SGC|1|54|G|4993
6SGC|1|54|G|4994
*
6SGC|1|54|C|5057
6SGC|1|54|A|5058
6SGC|1|54|C|5059

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain d2

eL31