IL_6SGC_168

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAGUAC*GGAAUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_168 not in the Motif Atlas

Geometric match to IL_7A0S_007

Geometric discrepancy: 0.1735

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6SGC|1|74|G|71
6SGC|1|74|U|72
6SGC|1|74|U|73
6SGC|1|74|A|74
6SGC|1|74|G|75
6SGC|1|74|U|76
6SGC|1|74|A|77
6SGC|1|74|C|78
*
6SGC|1|74|G|98
6SGC|1|74|G|99
6SGC|1|74|A|100
6SGC|1|74|A|101
6SGC|1|74|U|102
6SGC|1|74|A|103
6SGC|1|74|C|104

Current chains

Chain 74

5S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain D2

60S ribosomal protein L5

Chain F2

uL30

Chain I2

60S ribosomal protein L10

Chain S2

eL20

Chain T2

eL21