IL_6SGC_174

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

6SGC|1|A1|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_174 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.3101

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6SGC|1|A1|C|37
6SGC|1|A1|A|38
6SGC|1|A1|A|39
6SGC|1|A1|A|40
*
6SGC|1|A1|U|514
6SGC|1|A1|G|515
6SGC|1|A1|A|516
6SGC|1|A1|C|517
6SGC|1|A1|G|518

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain K1

Ribosomal protein S9 (Predicted)