IL_6SGC_193

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6SGC|1|A1|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_193 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1052

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6SGC|1|A1|G|411
6SGC|1|A1|G|412
6SGC|1|A1|G|413
*
6SGC|1|A1|C|424
6SGC|1|A1|G|425
6SGC|1|A1|A|426
6SGC|1|A1|U|427
6SGC|1|A1|U|428
6SGC|1|A1|C|429

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Y1

uS12