IL_6SGC_199

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_199 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2084

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6SGC|1|A1|G|535
6SGC|1|A1|A|536
6SGC|1|A1|C|537
*
6SGC|1|A1|G|546
6SGC|1|A1|G|547
6SGC|1|A1|C|548
6SGC|1|A1|C|549

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain f1

40S ribosomal protein S30