IL_6SGC_205

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6SGC|1|A1|A|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_205 not in the Motif Atlas

Geometric match to IL_4LFB_022

Geometric discrepancy: 0.1311

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6SGC|1|A1|G|665
6SGC|1|A1|U|666
6SGC|1|A1|U|667
6SGC|1|A1|A|668
6SGC|1|A1|A|669
6SGC|1|A1|A|670
6SGC|1|A1|A|671
*
6SGC|1|A1|U|1161
6SGC|1|A1|C|1162

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Y1

uS12

Chain b1

eS26