IL_6SGC_208

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGC*GUCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_208 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2484

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6SGC|1|A1|G|692
6SGC|1|A1|A|693
6SGC|1|A1|G|694
6SGC|1|A1|C|695
*
6SGC|1|A1|G|731
6SGC|1|A1|U|732
6SGC|1|A1|C|733
6SGC|1|A1|C|734

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain I1

40S ribosomal protein S7

Chain X1

Ribosomal protein S15a