IL_6SGC_212

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_212 not in the Motif Atlas

Geometric match to IL_5Y85_006

Geometric discrepancy: 0.089

The information below is about IL_5Y85_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6SGC|1|A1|G|874
6SGC|1|A1|A|875
6SGC|1|A1|C|876
*
6SGC|1|A1|G|910
6SGC|1|A1|C|911
6SGC|1|A1|C|912

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain I1

40S ribosomal protein S7

Chain M1

Ribosomal protein S11

Chain R2

eL19