IL_6SGC_219

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6SGC|1|A1|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_219 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1169

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6SGC|1|A1|G|952
6SGC|1|A1|C|953
6SGC|1|A1|U|954
6SGC|1|A1|A|955
6SGC|1|A1|G|956
*
6SGC|1|A1|C|967
6SGC|1|A1|U|968
6SGC|1|A1|U|969
6SGC|1|A1|G|970
6SGC|1|A1|G|971
6SGC|1|A1|A|972
6SGC|1|A1|C|973
6SGC|1|A1|C|974

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain C1

40S ribosomal protein S3a

Chain P1

uS11