IL_6SGC_222
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6SGC|1|A1|C|1153, 6SGC|1|A1|U|1155, 6SGC|1|A1|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_222 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1283
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|A1|C|1091
6SGC|1|A1|G|1092
6SGC|1|A1|A|1093
*
6SGC|1|A1|U|1152
6SGC|1|A1|C|1153
6SGC|1|A1|U|1154
6SGC|1|A1|U|1155
6SGC|1|A1|U|1156
6SGC|1|A1|G|1157
6SGC|1|A1|G|1158
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain D1
- uS5
- Chain M1
- Ribosomal protein S11
- Chain O1
- Ribosomal_S13_N domain-containing protein
- Chain X1
- Ribosomal protein S15a
- Chain Y1
- uS12
- Chain c1
- 40S ribosomal protein S27
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