IL_6SGC_226
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_226 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.082
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|G|1168
6SGC|1|A1|G|1169
6SGC|1|A1|A|1170
6SGC|1|A1|G|1171
6SGC|1|A1|U|1172
6SGC|1|A1|A|1173
6SGC|1|A1|U|1174
6SGC|1|A1|G|1175
*
6SGC|1|A1|U|1186
6SGC|1|A1|G|1187
6SGC|1|A1|A|1188
6SGC|1|A1|A|1189
6SGC|1|A1|A|1190
6SGC|1|A1|C|1191
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y1
- uS12
- Chain n2
- 60s ribosomal protein l41
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