IL_6SGC_235

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_235 not in the Motif Atlas

Geometric match to IL_422D_001

Geometric discrepancy: 0.3963

The information below is about IL_422D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6SGC|1|A1|A|1291
6SGC|1|A1|C|1292
6SGC|1|A1|A|1293
6SGC|1|A1|G|1294
*
6SGC|1|A1|C|1305
6SGC|1|A1|U|1306
6SGC|1|A1|U|1307
6SGC|1|A1|U|1308

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain Q1

uS19

Chain e1

uS14

Chain g1

Ribosomal protein S27a