IL_6SGC_239

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6SGC|1|A1|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_239 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1712

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SGC|1|A1|C|1337
6SGC|1|A1|G|1338
*
6SGC|1|A1|C|1488
6SGC|1|A1|A|1489
6SGC|1|A1|G|1490

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain D1

uS5

Chain E1

uS5

Chain R1

Ribosomal protein S16

Chain V1

Ribosomal_S10 domain-containing protein

Chain e1

uS14

Chain i1

polyA mRNA