IL_6SGC_240

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_240 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.1003

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6SGC|1|A1|U|1347
6SGC|1|A1|G|1348
6SGC|1|A1|G|1349
*
6SGC|1|A1|C|1380
6SGC|1|A1|G|1381
6SGC|1|A1|A|1382

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain B1

uS2

Chain D1

uS5

Chain E1

uS5

Chain S1

eS17