IL_6SGC_243

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6SGC|1|A1|C|1403, 6SGC|1|A1|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_243 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1302

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6SGC|1|A1|A|1402
6SGC|1|A1|C|1403
6SGC|1|A1|U|1404
6SGC|1|A1|A|1405
*
6SGC|1|A1|U|1441
6SGC|1|A1|U|1442
6SGC|1|A1|C|1443
6SGC|1|A1|U|1444

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain R1

Ribosomal protein S16

Chain V1

Ribosomal_S10 domain-containing protein