IL_6SGC_245

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_245 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.0999

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6SGC|1|A1|A|1537
6SGC|1|A1|C|1538
6SGC|1|A1|U|1539
*
6SGC|1|A1|A|1594
6SGC|1|A1|U|1595
6SGC|1|A1|U|1596

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain G1

Ribosomal protein S5

Chain R1

Ribosomal protein S16

Chain T1

eS13

Chain U1

eS19

Chain a1

eS25