IL_6SGC_249

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6SGC|1|A1|C|1701, 6SGC|1|A1|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_249 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1876

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6SGC|1|A1|C|1700
6SGC|1|A1|C|1701
6SGC|1|A1|G|1702
*
6SGC|1|A1|C|1833
6SGC|1|A1|A|1834
6SGC|1|A1|A|1835
6SGC|1|A1|G|1836

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain b1

eS26

Chain i1

polyA mRNA