IL_6SGC_250
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_250 not in the Motif Atlas
- Homologous match to IL_4V88_464
- Geometric discrepancy: 0.0871
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|G|1702
6SGC|1|A1|C|1703
6SGC|1|A1|C|1704
6SGC|1|A1|C|1705
*
6SGC|1|A1|G|1829
6SGC|1|A1|U|1830
6SGC|1|A1|A|1831
6SGC|1|A1|A|1832
6SGC|1|A1|C|1833
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain i1
- polyA mRNA
- Chain n2
- 60s ribosomal protein l41
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