IL_6SGC_252

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6SGC|1|A1|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_252 not in the Motif Atlas

Geometric match to IL_1DUQ_001

Geometric discrepancy: 0.3021

The information below is about IL_1DUQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

6SGC|1|A1|C|1708
6SGC|1|A1|G|1709
6SGC|1|A1|C|1710
6SGC|1|A1|U|1711
*
6SGC|1|A1|A|1822
6SGC|1|A1|A|1823
6SGC|1|A1|A|1824
6SGC|1|A1|A|1825
6SGC|1|A1|G|1826

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain Y1

uS12

Chain i1

polyA mRNA

Chain n2

60s ribosomal protein l41