IL_6SGC_257
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_257 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.1013
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6SGC|1|A1|U|1733
6SGC|1|A1|G|1734
6SGC|1|A1|A|1735
6SGC|1|A1|G|1736
*
6SGC|1|A1|C|1798
6SGC|1|A1|G|1799
6SGC|1|A1|A|1800
6SGC|1|A1|A|1801
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain 54
- Large subunit ribosomal RNA; LSU rRNA
- Chain H1
- 40S ribosomal protein S6
- Chain J1
- 40S ribosomal protein S8
- Chain W2
- TRASH domain-containing protein
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