IL_6SGC_262
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 6SGC|1|54|G|119, 6SGC|1|54|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SGC_262 not in the Motif Atlas
- Homologous match to IL_8GLP_287
- Geometric discrepancy: 0.1093
- The information below is about IL_8GLP_287
- Detailed Annotation
- Kink-turn with embedded cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_65996.1
- Basepair signature
- cWW-L-cWW-L-tSH-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|54|C|118
6SGC|1|54|G|119
6SGC|1|54|A|120
6SGC|1|54|A|121
6SGC|1|54|U|122
*
6SGC|1|54|A|147
6SGC|1|54|A|148
6SGC|1|54|A|149
6SGC|1|54|U|150
6SGC|1|54|G|151
6SGC|1|54|U|152
6SGC|1|54|G|153
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G2
- eL8
- Chain N2
- Ribosomal protein L15
- Chain h2
- uL29
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