IL_6SGC_268

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGCU*GAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_268 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.1122

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6SGC|1|54|G|4400
6SGC|1|54|G|4401
6SGC|1|54|C|4402
6SGC|1|54|U|4403
*
6SGC|1|54|G|4440
6SGC|1|54|A|4441
6SGC|1|54|U|4442
6SGC|1|54|C|4443
6SGC|1|54|C|4444

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain I2

60S ribosomal protein L10

Chain b2

eL29