IL_6SGC_269

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|4466
6SGC|1|54|A|4467
6SGC|1|54|U|4468
6SGC|1|54|U|4469
6SGC|1|54|G|4470
*
6SGC|1|54|C|4485
6SGC|1|54|C|4486
6SGC|1|54|A|4487
6SGC|1|54|A|4488
6SGC|1|54|G|4489
6SGC|1|54|C|4490
6SGC|1|54|G|4491

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain H2

uL6

Chain O2

uL13

Chain V2

Ribosomal protein L23

Chain m2

eL40