IL_6SGC_272

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUAC*GUAAU

Length

9 nucleotides

Bulged bases

6SGC|1|A1|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SGC_272 not in the Motif Atlas

Geometric match to IL_8C3A_018

Geometric discrepancy: 0.2958

The information below is about IL_8C3A_018

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6SGC|1|A1|A|529
6SGC|1|A1|U|530
6SGC|1|A1|A|531
6SGC|1|A1|C|532
*
6SGC|1|A1|G|552
6SGC|1|A1|U|553
6SGC|1|A1|A|554
6SGC|1|A1|A|555
6SGC|1|A1|U|556

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain K1

Ribosomal protein S9 (Predicted)

Chain f1

40S ribosomal protein S30