IL_6SJ6_006

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCCG*CGGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_006 not in the Motif Atlas

Geometric match to IL_1J2B_001

Geometric discrepancy: 0.3473

The information below is about IL_1J2B_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68909.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6SJ6|1|A|C|186
6SJ6|1|A|C|187
6SJ6|1|A|C|188
6SJ6|1|A|G|189
*
6SJ6|1|A|C|213
6SJ6|1|A|G|214
6SJ6|1|A|G|215
6SJ6|1|A|A|216
6SJ6|1|A|G|217

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L34