IL_6SJ6_012

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UUG*UUUG

Length

7 nucleotides

Bulged bases

6SJ6|1|A|U|705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_012 not in the Motif Atlas

Homologous match to IL_4WF9_018

Geometric discrepancy: 0.1563

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6SJ6|1|A|U|638
6SJ6|1|A|U|639
6SJ6|1|A|G|640
*
6SJ6|1|A|U|704
6SJ6|1|A|U|705
6SJ6|1|A|U|706
6SJ6|1|A|G|707

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15