IL_6SJ6_032

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

6SJ6|1|A|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_032 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3315

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6SJ6|1|A|C|1235
6SJ6|1|A|G|1236
6SJ6|1|A|U|1237
6SJ6|1|A|U|1238
*
6SJ6|1|A|A|1284
6SJ6|1|A|A|1285
6SJ6|1|A|G|1286
6SJ6|1|A|U|1287
6SJ6|1|A|G|1288

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20