3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SJ6_044 not in the Motif Atlas
Homologous match to IL_4WF9_064
Geometric discrepancy: 0.1989
The information below is about IL_4WF9_064
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6SJ6|1|A|G|1710
6SJ6|1|A|G|1711
6SJ6|1|A|A|1712
6SJ6|1|A|A|1713
*
6SJ6|1|A|U|2020
6SJ6|1|A|C|2021

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L3
Chain N
50S ribosomal protein L14

Coloring options:


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