IL_6SJ6_046

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6SJ6|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SJ6_046 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1391

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6SJ6|1|A|C|1730
6SJ6|1|A|G|1731
6SJ6|1|A|U|1732
6SJ6|1|A|A|1733
6SJ6|1|A|A|1734
6SJ6|1|A|C|1735
*
6SJ6|1|A|G|1740
6SJ6|1|A|G|1741
6SJ6|1|A|A|1742
6SJ6|1|A|G|1743
6SJ6|1|A|A|1744
6SJ6|1|A|A|1745
6SJ6|1|A|G|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2