3D structure

PDB id
6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.23 Å

Loop

Sequence
UGUAC*GGUAG
Length
10 nucleotides
Bulged bases
6SJ6|1|A|U|2716, 6SJ6|1|A|A|2717
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6SJ6_074 not in the Motif Atlas
Homologous match to IL_4WF9_102
Geometric discrepancy: 0.1505
The information below is about IL_4WF9_102
Detailed Annotation
UAA/GAN related, with intercalation
Broad Annotation
UAA/GAN related, with intercalation
Motif group
IL_23774.1
Basepair signature
cWW-L-R-L-tHS-cWW
Number of instances in this motif group
11

Unit IDs

6SJ6|1|A|U|2714
6SJ6|1|A|G|2715
6SJ6|1|A|U|2716
6SJ6|1|A|A|2717
6SJ6|1|A|C|2718
*
6SJ6|1|A|G|2745
6SJ6|1|A|G|2746
6SJ6|1|A|U|2747
6SJ6|1|A|A|2748
6SJ6|1|A|G|2749

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L3
Chain Q
50S ribosomal protein L17
Chain S
50S ribosomal protein L19

Coloring options:


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